Не могу обновиться получаю заблокированный пакет sys-apps/gptfdisk

Calculating dependencies... done!
[ebuild     U #] dev-libs/libpcre-8.12 [8.02] USE="recursion-limit%*" 
[ebuild   R   #] media-libs/a52dec-0.7.4-r6  USE="static-libs%*" 
[ebuild   R   #] sys-apps/file-5.05  USE="static-libs%*" 
[ebuild   R   #] dev-libs/boost-1.42.0-r2  USE="static-libs*" 
[ebuild   R   #] dev-libs/libatasmart-0.17  USE="static-libs%*" 
[binary     U #] virtual/ffmpeg-0.6-r1 [0.6]
[binary     U #] app-misc/cl-tools-meta-11.3-r5 [11.3-r4]
[ebuild     U  ] www-client/firefox-3.6.16 [3.6.15] USE="gnome* -debug%" 
[ebuild   R   #] app-office/libreoffice-3.3.2  USE="gnome*" 
[binary     U #] www-plugins/adobe-flash-10.2.153.1 [10.2.152.27_p201011173-r2]
[binary     U #] app-misc/cl-network-meta-11.3-r3 [11.3-r2]
[binary     U #] app-misc/cl-decoration-meta-11.3-r2 [11.3-r1]
[uninstall     ] x11-themes/xfce4-icon-theme-4.4.3 
[blocks b      ] x11-themes/xfce4-icon-theme ("x11-themes/xfce4-icon-theme" is blocking app-misc/cl-decoration-meta-11.3-r2)
[blocks B      ] sys-apps/gptfdisk ("sys-apps/gptfdisk" is blocking app-misc/cl-tools-meta-11.3-r5)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (app-misc/cl-tools-meta-11.3-r5::calculate, binary scheduled for merge) pulled in by
    app-misc/cl-tools-meta required by (app-misc/cld-meta-11.3::calculate, installed)

  (sys-apps/gptfdisk-0.6.13::gentoo, installed) pulled in by
    sys-apps/gptfdisk required by (app-misc/cl-tools-meta-11.3-r5::calculate, binary scheduled for merge)
    sys-apps/gptfdisk required by (sys-apps/calculate-install-2.2.12-r3::calculate, installed)


For more information about Blocked Packages, please refer to the following
section of the Gentoo Linux x86 Handbook (architecture is irrelevant):

http://www.gentoo.org/doc/en/handbook/handbook-x86.xml?full=1#blocked

Исправил. Обновите оверлей <<layman -S>>.

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U #] sys-devel/binutils-config-2-r1 [1.9-r4]
[ebuild     U #] dev-libs/libpcre-8.12 [8.02] USE="recursion-limit%*" 
[ebuild   R   #] media-libs/a52dec-0.7.4-r6  USE="static-libs%*" 
[ebuild   R   #] sys-apps/file-5.05  USE="static-libs%*" 
[binary     U #] sys-apps/calculate-templates-2.2.12-r4 [2.2.12-r3]
[binary     U #] sys-apps/calculate-lib-2.2.12-r5 [2.2.12-r3]
[ebuild   R   #] dev-libs/boost-1.42.0-r2  USE="static-libs*" 
[ebuild   R   #] dev-libs/libatasmart-0.17  USE="static-libs%*" 
[ebuild   R   #] media-libs/freeglut-2.6.0  USE="static-libs%*" 
[ebuild   R   #] media-libs/jasper-1.900.1-r3  USE="static-libs%*" 
[binary     U #] virtual/ffmpeg-0.6-r1 [0.6]
[binary     U #] app-misc/cl-decoration-meta-11.3-r2 [11.3-r1]
[binary     U #] app-misc/cl-tools-meta-11.3-r6 [11.3-r4]
[binary     U #] sys-apps/calculate-utilities-2.2.12-r13 [2.2.12-r10]
[ebuild     U  ] www-client/firefox-3.6.16 [3.6.15] USE="gnome* -debug%" 
[ebuild   R   #] app-office/libreoffice-3.3.2  USE="gnome*" 
[binary     U #] www-plugins/adobe-flash-10.2.153.1 [10.2.152.27_p201011173-r2]
[binary     U #] app-misc/cl-network-meta-11.3-r3 [11.3-r2]
[blocks B      ] x11-themes/xfce4-icon-theme ("x11-themes/xfce4-icon-theme" is blocking app-misc/cl-decoration-meta-11.3-r2)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (x11-themes/xfce4-icon-theme-4.4.3::gentoo, installed) pulled in by
    x11-themes/xfce4-icon-theme required by @selected

  (app-misc/cl-decoration-meta-11.3-r2::calculate, binary scheduled for merge) pulled in by
    app-misc/cl-decoration-meta required by (app-misc/cld-meta-11.3::calculate, installed)


For more information about Blocked Packages, please refer to the following
section of the Gentoo Linux x86 Handbook (architecture is irrelevant):

http://www.gentoo.org/doc/en/handbook/handbook-x86.xml?full=1#blocked


!!! The following installed packages are masked:
- x11-themes/xfce4-icon-theme-4.4.3::gentoo (masked by: package.mask)
/usr/portage/profiles/package.mask:
 # Samuli Suominen <ssuominen@gentoo.org> (29 Mar 2011)
 # Use more freedesktop.org compatible icon theme instead, such as
 # tango-icon-theme or gnome-icon-theme.   This one is outdated one
 # from Xfce 4.4.0 and doesn't provide useful icon links to Xfce 4.8.0
 # anymore.
#
 # http://standards.freedesktop.org/icon-naming-spec/icon-naming-spec-latest.html
 # http://standards.freedesktop.org/icon-theme-spec/icon-theme-spec-latest.html
#

For more information, see the MASKED PACKAGES section in the emerge
man page or refer to the Gentoo Handbook.

Остался еще один blocked-пакет: x11-themes/xfce4-icon-theme

Вообще странно, cl-decoration-meta-11.3-r2 как раз должен удалять xfce4-icon-theme. Покажите содержимое файла /var/lib/portage/world.

Проблему можно решить удалив этот пакет:

emerge -C xfce4-icon-theme

app-crypt/truecrypt
app-editors/emacs
app-misc/calculate-meta
app-misc/mc
app-office/gnucash
app-portage/autounmask
app-vim/conque
dev-db/postgresql-base
dev-db/postgresql-server
dev-java/sun-jdk
dev-lang/erlang
dev-vcs/git-sh
dev-vcs/gitg
dev-vcs/subversion
kde-misc/krusader
media-gfx/cld-themes
media-gfx/splash-themes-livecd
net-analyzer/tcpdump
net-analyzer/trafshow
net-analyzer/wireshark
net-misc/telnet-bsd
net-p2p/amule
net-p2p/ktorrent
sys-process/iotop
www-client/firefox
www-client/opera
x11-drivers/nvidia-drivers
x11-drivers/xf86-video-intel
x11-misc/cairo-dock
x11-misc/cairo-dock-plugins
x11-themes/xfce4-icon-theme

Выполняя установку пакета x11-themes/xfce4-icon-theme, Вы добавили его в world. Мантейнеры замаскировали пакет и мета-пакет cl-decoration-meta-11.3-r2 пытается его удалить, но не может, т.к. он в world. Чтобы в будущем такого не происходило, переустанавливайте пакеты с опцией <<-1>>.

По поводу sys-apps/gptfdisk, покажите вывод. Пакет был переименован. Выполните <> перед обновлением.